Kloosterman Lab
PUBLICATIONS
Single-trial dynamics of hippocampal spatial representations are modulated by reward value
Frédéric Michon, Esther Krul, Jyh-Jang Sun, Fabian Kloosterman
Current Biology, 2021
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Implantation of Neuropixels probes for chronic recording of neuronal activity in freely behaving mice and rats
Rik Van Daal, Cagatay Aydin, Frédéric Michon, Ano AA Aarts, Michael Kraft, Fabian Kloosterman, Sebastian Haesler
Nat Protoc (2021), 2021
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Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings
Nicholas A. Steinmetz, Cagatay Aydin, Anna Lebedeva, Michael Okun, Marius Pachitariu, Marius Bauza, Maxime Beau, Jai Bhagat, Claudia Böhm, Martijn Broux, Susu Chen, Jennifer Colonell, Richard J. Gardner, Bill Karsh, Fabian Kloosterman, Dimitar Kostadinov, Carolina Mora-Lopez, John O’Callaghan, Junchol Park, Jan Putzeys, Britton Sauerbrei, Rik Van Daal, Abraham Z. Vollan, Shiwei Wang, Marleen Welkenhuysen, Zhiwen Ye, Joshua T. Dudman, Barundeb Dutta, Adam W. Hantman, Kenneth D. Harris, Albert K. Lee, Edvard I. Moser, John O’Keefe, Alfonso Renart, Karel Svoboda, Michael Häusser, Sebastian Haesler, Matteo Carandini, Timothy D. Harris
Science Vol. 372, Issue 6539, 2021
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Pubmed
A graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance
Jasper Wouters, Fabian Kloosterman, Alexander Bertrand
2020
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A Dual Reward-Place Association Task to Study the Preferential Retention of Relevant Memories in Rats
Frédéric Michon, Jyh-Jang Sun, Chae-Young Kim, Fabian Kloosterman
Front. Behav. Neurosci., 14 May 2020, 2020
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Pubmed
A Neural Network-Based Spike Sorting Feature Map That Resolves Spike Overlap in the Feature Space
Jasper Wouters, Fabian Kloosterman, Alexander Bertrand
IEEE Transactions on Signal Processing 1175 - 1179, 2020
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System for recording from multiple flexible polyimide neural probes in freely behaving animals
Rik Van Daal, Jyh-Jang Sun, Frederik Ceyssens, Frédéric Michon, Michael Kraft, Robert Puers, Fabian Kloosterman
2020
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A data-driven regularization approach for template matching in spike sorting with high-density neural probes
Jasper Wouters, Fabian Kloosterman, Alexander Bertrand
41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 2019, pp. 4376-4379, 2019
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Post-learning Hippocampal Replay Selectively Reinforces Spatial Memory for Highly Rewarded Locations
Frédéric Michon, Jyh-Jang Sun, Chae-Young Kim, Davide Ciliberti, Fabian Kloosterman
Current Biology, 2019
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Signal-to-peak-interference ratio maximization with automatic interference weighting for threshold-based spike sorting of high-density neural probe data
Jasper Wouters, Fabian Kloosterman, Alexander Bertrand
9th International IEEE/EMBS Conference on Neural Engineering (NER), San Francisco, CA, USA. pp. 247-250, 2019
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Real-time readout of large-scale unsorted neural ensemble place codes
Sile Hu, Davide Ciliberti, Andres D Grosmark, Frédéric Michon, Daoyun Ji, Hector Penagos, György Buzsáki, Matthew A Wilson, Fabian Kloosterman, Zhe Chen
Cell Reports, 25(10): 2635-2642.e5, 2018
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Real-time classification of experience-related ensemble spiking patterns for closed-loop applications
Davide Ciliberti, Frédéric Michon, Fabian Kloosterman
eLife, 7:e36275, 2018
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Towards online spike sorting for high-density neural probes using discriminative template matching with suppression of interfering spikes
Jasper Wouters, Fabian Kloosterman, Alexander Bertrand
J Neural Eng. 2018 Oct;15(5):056005, 2018
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Pubmed
Algorithm/Architecture Co-optimisation Technique for Automatic Data Reduction of Wireless Read-Out in High-Density Electrode Arrays
Yahya H Yassin, Francky Catthoor, Fabian Kloosterman, Jyh-Jang Sun, Joao Couto, Per Gunnar Kjeldsberg, Nick Van Helleputte
ACM Transactions on Embedded Computing Systems, Vol. 17, No. 3, Article 67, 2018
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Data-driven multi-channel filter design with peak-interference suppression for threshold-based spike sorting in high-density neural probes
Jasper Wouters, Fabian Kloosterman, Alexander Bertrand
IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Calgary, AB, 2018, pp. 955-959, 2018
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Characteristics of CA1 place fields in a complex maze with multiple choice points
Heikki Tanila, Ku S, Fabian Kloosterman, Matthew A Wilson
Hippocampus, 28(2) 81-96, 2017
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Pubmed
Time Multiplexed Active Neural Probe with 1356 Parallel Recording Sites
Bogdan C Raducanu, Refet F Yazicioglu, Carolina M Lopez, Marco Ballini, Jan Putzeys, Shiwei Wang, Alexandru Andrei, Veronique Rochus, Marleen Welkenhuysen, Nick van Helleputte, Silke Musa, Robert Puers, Fabian Kloosterman, Chris van Hoof, Richárd Fiáth, István Ulbert, Srinjoy Mitra
Sensors 2017, 17(10), 2388, 2017
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Involvement of fast-spiking cells in ictal sequences during spontaneous seizures in rats with chronic temporal lobe epilepsy
Adam R Neumann, Robrecht Raedt, Hendrik W Steenland, Mathieu Sprengers, Katarzyna Bzymek, Zaneta Navratilova, Lilia Mesina, Jeanne Xie, Valerie Lapointe, Fabian Kloosterman, Kristl Vonck, Paul AJM Boon, Ivan Soltesz, Bruce L McNaughton, Artur Luczak
BRAIN Brain, Volume 140, Issue 9, 2017
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Falcon: a highly flexible open-source software for closed-loop neuroscience
Davide Cilliberti, Fabian Kloosterman
IOPscience, 2017
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Pubmed
Time multiplexed active neural probe with 678 parallel recording sites
Bogdan C Raducanu, Refet F Yazicioglu, Carolina M Lopez, Marco Ballini, Jan Putzeys, Shiwei Wang, Alexandru Andrei, Marleen Welkenhuysen, Nick van Helleputte, Silke Musa, Robert Puers, Fabian Kloosterman, Chris van Hoof, Srinjoy Mitra
46th European Solid-State Device Research Conference (ESSDERC), Lausanne, 2016, pp. 385-388,, 2016
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Integration of silicon-based neural probes and micro-drive arrays for chronic recordings of large populations of neurons in behaving animals
Frédéric Michon, Arno Aarts, Tobias Holzhammer, Patrick Ruther, Gustaaf Borghs, Bruce McNaughton, Fabian Kloosterman
J Neural Eng. 2016 Aug;13(4):046018, 2016
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Pubmed
A Novel Nonparametric Approach for Neural Encoding and Decoding Models of Multimodal Receptive Fields
Rahul Agarwal, Zhe Chen, Fabian Kloosterman, Matthew A Wilson, Sridevi V Sarma
Neural Comput. 2016 Jul;28(7):1356-87, 2016
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Pubmed
VTA neurons coordinate with the hippocampal reactivation of spatial experience
Stephen N Gomperts, Fabian Kloosterman, Matthew Wilson
eLife 4, 2015
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Pubmed
Probabilistic approaches to uncover rat hippocampal population codes.
Zhe Chen, Fabian Kloosterman, Matthew A Wilson
Advanced State Space Methods for Neural and Clinical Data, Z. Chen (Ed.), Cambridge University Press, 2015
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Kernel density compression for real-time Bayesian encoding/decoding of unsorted hippocampal spikes
Danaipat Sodkomkham, Davide Ciliberti, Matthew A Wilson, Ken-ichi Fukui, Koichi Moriyama, Masayuki Numao, Fabian Kloosterman
Knowledge-Based Systems, 14: 4-12, 2016
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A closed-loop compressive-sensing-based neural recording system
Jie Zhang, Srinjoy Mitra, Yuanming Suo, Andrew Cheng, Tao Xiong, Frédéric Michon, Marleen Welkenhuysen, Fabian Kloosterman, Peter S Chin, Steven Hsiao, Trac D Tran, Firat Yazicioglu, Ralph Etienne-Cummings
Journal of Neural Engineering 12(3):036005, 2015
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Pubmed
Ultra-high-density in-vivo neural probes
Firat Yazicioglu, Carolina Mora Lopez, Srinjoy Mitra, Bogdan Raducanu, Silke Musa, Fabian Kloosterman
Conf Proc IEEE Eng Med Biol Soc. 2014:2032-5, 2014
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Pubmed
Bayesian decoding using unsorted spikes in the rat hippocampus
Fabian Kloosterman, Stuart P Layton, Zhe Chen, Matthew A Wilson
Journal of Neurophysiology 111(1):217-27, 2014
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Pubmed
Uncovering spatial topology represented by rat hippocampal population neuronal codes
Zhe Chen, Fabian Kloosterman, Emery N Brown, Matthew A Wilson
Journal of Computational Neuroscience, 33(2), 227-255, 2012
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Pubmed
Transductive Neural Decoding for Unsorted Neuronal Spikes of Rat Hippocampus
Zhe Chen, Fabian Kloosterman, Stuart Layton, Matthew A Wilson
Conf Proc IEEE Eng Med Biol Soc. 2012: 1310–1313, 2012
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Pubmed
Analysis of Hippocampal Memory Replay Using Neural Population Decoding
Fabian Kloosterman
Neuronal Network Analysis pp 259-282, 2011
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Variational Bayesian inference for point process generalized linear models in neural spike trains analysis
Zhe Chen, Fabian Kloosterman, Matthew A Wilson, Emery N Brown
2010 IEEE International Conference on Acoustics, Speech and Signal Processing, pp 2086-2089, 2010
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Micro-drive array for chronic in vivo recording: tetrode assembly
David P Nguyen, Stuart P Layton, Gregory Hale, Stephen N Gomperts, Thomas J Davidson, Fabian Kloosterman, Matthew A Wilson
J. Vis. Exp. (26). pii: 1098, 2009
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Hippocampal replay of extended experience
Thomas J Davidson, Fabian Kloosterman, Matthew A Wilson
Neuron, 63(4): 497–507, 2009
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Characterizing the dynamic frequency structure of fast oscillations in the rodent hippocampus
David P Nguyen, Fabian Kloosterman, Riccardo Barbieri, Emery N Brown, Matthew A Wilson
Frontiers in integrative neuroscience, 3:11, 2009
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Micro-drive array for chronic in vivo recording: drive fabrication
Fabian Kloosterman, Thomas J Davidson, Stephen N Gomperts, Stuart P Layton, Gregory Hale, David P Nguyen, Matthew A Wilson
Journal of visualized experiments 26, pii: 1094, 2009
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Pubmed
Presynaptic GABA(B) receptors on glutamatergic terminals of CA1 pyramidal cells decrease in efficacy after partial hippocampal kindling
Nick Poon, Fabian Kloosterman, Chiping Wu, L Stan Leung
Synapse. 2006 Mar 1;59(3):125-34, 2006
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Presubiculum stimulation in vivo evokes distinct oscillations in superficial and deep entorhinal cortex layers in chronic epileptic rats
Else A Tolner, Fabian Kloosterman, Erwin A van Vliet, Menno P Witter, Fernando H Lopes da Silva, Jan A Gorter
J. Neurosci. 25 (38): 8755-8765f, 2005
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Physiological changes in chronic epileptic rats are prominent in superficial layers of the medial entorhinal area
Else A Tolner, Fabian Kloosterman, Stiliyan N Kalitzin, Fernando H Lopes Da Silva, Jan A Gorter
Epilepsia 46(suppl 5): 72-81, 2005
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Two reentrant pathways in the hippocampal-entorhinal system
Fabian Kloosterman, Theo van Haeften, Fernando H Lopes da Silva
Hippocampus, 14(8):1026-39, 2004
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Electrophysiological characterization of interlaminar entorhinal connections: an essential link for re-entrance in the hippocampal-entorhinal system
Fabian Kloosterman, Theo van Haeften, Menno P Witter, Fernando H Lopes da Silva
European journal of neuroscience 18(11):3037-52, 2003
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Topographical and laminar organization of subicular projections to the parahippocampal region of the rat
Fabian Kloosterman, Menno P Witter, Theo van Haeften
Journal of comparative neurology 455(2):156-71, 2002
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Recording and marking with silicon multichannel electrodes
George Townsend, Pascal Peloquin, Fabian Kloosterman, Jamille F Hetke, L Stan Leung
Brain Res. Protoc. 9(2): 122-129, 2002
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Apical and basal orthodromic population spikes in hippocampal CA1 in vivo show different origins and patterns of propagation
Fabian Kloosterman, Pascal Peloquin, L Stan Leung
J Neurophysiol. 2001 Nov;86(5):2435-44, 2001
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